Code for optimising for neuromodulation fo single cell NEURON models
Project description
Neuromodcell
Optimizing neuromodulation in multicompartmental neuron model.
Tutorial for setting up neuromodulation for single cell models
See examples/ for Jupyter Notebook on dSPN optimization and analysis
Install
To use Neuromodcell, you first have to install NEURON on your machine , then install Neuromodcell via
pip install neuromodcell
Models
The multicompartmental models should have morphology file (SWC), mechanisms.json (JSON) and parameters.json (JSON) files. See examples/models/dspn for examples of dSPN multicompartmental models.
Support
We provide support via gitter chat or github issues page
Requirements
- neuron
- elephant
- bluepyopt
- deepdif
- matplotlib
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