Module to identify intranuclear proteins on basis offluorescence images.
Project description
# NucDetect - A python package for Detection and Quantification of DNA Doublestrand Breaks (v0.5)
NucDetect is a Python package for the detection and quantification of γH2AX and 53BP1 foci inside nuclei. Its written in pure Python 3.7, obeys the PEP 8 style guidelines and includes PEP 484 type hints as well as Epytext docstrings.
### Note The current release is a very early alpha version. Please report report any detected bugs and/or improvement suggestions.
Requirements
NucDetect is compatible with Windows, Mac OS X and Linux operating systems. It is coded using Python 3.6. It requires the following packages:
scipy>=0.19.0
numpy>=1.13.3
scikit-image>=0.15
matplotlib >= 3.0.2
PyQT5 >= 5.11.3
Pillow
qtawesome
piexif
tensorflow == 1.13.1
numba >= 0.45.1
Run the following commands to clone and install from GitHub.
`console $ git clone https://github.com/SilMon/NucDetect.git ` ### Supported Image Formats Following image formats are supported by NucDetect: * TIFF * PNG * JPG * BMP ___
Author: Romano Weiss
Co-Author: Stefan Rödiger
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for NucDetect-0.5.1.dev1-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 3b842ee5b3ad8fd76f8a6cdec033a0c9569233e9865b74551611cfc9fbb3d177 |
|
MD5 | 63410dd58a138819652bb7d0f8742545 |
|
BLAKE2b-256 | 2217fb77551802c268799ac7bcfcb0a62c30be88d7f0c68dec0aeb407390f288 |