PQEnalyzer 0.8.5

Plot and monitor PQ simulation output.

PQEnalyzer

Plot and monitor PQ energy, box, and optimizer output in a desktop or terminal interface.

Install

pip install PQEnalyzer

Quick Start

The GUI is the default:

pqenalyzer /path/to/simulation.en

Use the terminal interface with the tui subcommand:

pqenalyzer tui /path/to/simulation.en

PQEnalyzer detects the input format automatically. Use a format flag only when detection is ambiguous:

pqenalyzer --pq pq-output.en
pqenalyzer --qmcfc qmcfc-output.en
pqenalyzer --box box-output.data
pqenalyzer --opt optimization.data

pqenalyzer gui FILE is equivalent to pqenalyzer FILE.

Input

Output	Conventional file	Detection
PQ energy	.en with matching .info	.info layout
QMCFC energy	.en with matching .info	.info layout
PQ box	.box	suffix or file contents
PQ optimizer	.opt	suffix

Energy, box, and optimizer parsing is provided by PQAnalysis.

Energy files need a matching .info file in the same directory. PQ .info rows containing a single parameter column are supported.

Box files contain step x y z alpha beta gamma. PQEnalyzer plots BOX-X, BOX-Y, BOX-Z, ALPHA, BETA, GAMMA, and BOX-VOLUME.

Optimizer plots use the optimization step as the x-axis. They include energy changes, forces, convergence states, and limits. A convergence state of -1 means not converged, 0 means disabled, and 1 means converged. The first row is PQ's initialization snapshot. Final completion status remains in the PQ log.

GUI

Control	Result
Plot	Open a time-series plot for the selected parameter
Histogram	Open its distribution
Live Monitor	Open one time-series panel per parameter
Auto-Refresh	Watch loaded files and update open plots

Double-click a Live Monitor panel to open its focused plot. Plot settings belong to that focused window, so each window can use different overlays.

Auto-refresh starts with the GUI. If native file watching is unavailable, PQEnalyzer uses polling and shows (polling) in the status line.

Plot windows refit when resized. The Live Monitor also redistributes its grid; press f to fit it to the current screen. Use Plot Size in the sidebar, + and - in a plot window, or Ctrl+0 / Command+0 to restore 100%.

PQEnalyzer remembers the theme, plot size, window dimensions, selected parameter, auto-refresh state, and plot settings. Set PQENALYZER_CONFIG_DIR to override the platform settings directory.

TUI

pqenalyzer tui FILE [FILE ...]

Key	Action
Up / k, Down / j	Select a parameter
Enter	Open the selected chart
Esc	Return to the dashboard
r	Refresh
w	Pause or resume file watching
q	Quit

Plot Features

The GUI and TUI use the same plot features:

Feature	Time series	Histogram	TUI key
Mean	yes	yes	m
Median	yes	yes	n
Cumulative Average	yes	no	c
Self-Correlation Mean	yes	no	s
Difference (1 - 2)	yes	no	x
Running Average	yes	no	a

Self-Correlation Mean stays on the data's original scale; it is not normalized.

Multiple Files

pqenalyzer md-01.en md-02.en md-03.en

Common parameters are plotted together. A parameter found in only some files is plotted from those files. Shared parameters must use the same unit.

Difference plotting requires exactly two files and calculates file 1 - file 2. Points are matched by simulation time, simulation step, or optimization step. PQEnalyzer does not interpolate, extrapolate, or concatenate difference data. Raw series are hidden when Difference is enabled.

Development

pip install -e ".[test]"
python -m pytest -m "not benchmark and not e2e"

Run the end-to-end suite separately:

python -m pytest -m e2e