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Variational inference for pathway-based perturbation prediction

Learning pathway-informed virtual cellular operations.

Installation

  1. Create a virtual environment
conda create -n PathwayVI python=3.10 scipy numpy pandas scikit-learn && conda activate PathwayVI
  1. Install PyTorch following the official instruction.
pip3 install torch torchvision --index-url https://download.pytorch.org/whl/cu126
  1. Install PathwayVI
pip3 install PathwayVI

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