Proofreading backend for Neuroglancer
Project description
PyChunkedGraph
The PyChunkedGraph is a proofreading and segmentation data management backend with (not limited to) the following features:
- Concurrent proofreading by multiple users without restrictions on the workflow
- Continuous versioning of proofreading edits
- Making changes visible to all users immediately
- Local mincut computations
Scaling to large datasets
Deployment
While the PyChunkedGraph can be deployed as a stand-alone entity, we deploy it within our annotation infrastructure which uses a CI Kubernetes deployment. We will make instructions and scripts for a mostly automated deployment to Google Cloud available soon.
Building your own PyChunkedGraph
System Design
As a backend the PyChunkedGraph can be combined with any frontend that adheres to its API. We use an adapted version of neuroglancer which is publicly available.
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