PyComplexHeatmap 
PyComplexHeatmap is a Python package to plot complex heatmap (clustermap). Please click here for documentation.
Documentation:
https://dingwb.github.io/PyComplexHeatmap
PYPI
Wiki
wiki/layout
wiki/Parameters
wiki/Features
Dependencies:
- matplotlib
- numpy
- pandas
- scipy
- fastcluster (optional)
pip install --ignore-install matplotlib numpy pandas fastcluster
Citation
Ding, W., Goldberg, D. and Zhou, W. (2023), PyComplexHeatmap: A Python package to visualize multimodal genomics data. iMeta e115. https://doi.org/10.1002/imt2.115
DOI: 10.1002/imt2.115
PMID: 38454967
Installation
- Install using pip:
pip install PyComplexHeatmap
#upgrade from older version
pip install --upgrade PyComplexHeatmap
- Install the developmental version directly from github:
pip install git+https://github.com/DingWB/PyComplexHeatmap
# reinstall
pip uninstall -y PyComplexHeatmap && pip install git+https://github.com/DingWB/PyComplexHeatmap
OR
git clone https://github.com/DingWB/PyComplexHeatmap
cd PyComplexHeatmap
python setup.py install
Usage
Simple Guide To Get started
Example output
Click picture to view the source code
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Advanced Usage
Kwargs
More Examples
https://dingwb.github.io/PyComplexHeatmap/build/html/more_examples.html
Call for Contributions
The PyComplexHeatmap project welcomes your expertise and enthusiasm!
Small improvements or fixes are always appreciated. If you are considering larger contributions to the source code, please contact us (ding.wu.bin.gm@gmail.com).
Writing code isn’t the only way to contribute to PyComplexHeatmap. You can also:
- review pull requests
- help us stay on top of new and old issues
- develop tutorials, presentations, and other educational materials
- maintain and improve our website
- develop graphic design for our brand assets and promotional materials
- translate website content
- help with outreach and onboard new contributors
- put forward some new ideas about update.
1 maintainer
Metadata
1 maintainer
Release files for PyComplexHeatmap 1.8.5
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pycomplexheatmap-1.8.5.tar.gz | 9.8 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pycomplexheatmap-1.8.5-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 9.8 MB
Release files / pycomplexheatmap-1.8.5.tar.gz
| Download URL | pycomplexheatmap-1.8.5.tar.gz |
|---|---|
| Size | 9.8 MB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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No |
| Uploaded via |
twine/6.2.0 CPython/3.9.25
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Release files / pycomplexheatmap-1.8.5-py3-none-any.whl
| Download URL | pycomplexheatmap-1.8.5-py3-none-any.whl |
|---|---|
| Size | 67.0 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.9.25
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