A library to post-process MRI data
Project description
PyDactim
Description
Warning : Currently in development
A MRI preprocessing tool which provides a dozen of functions easy to use made from some of the most popular Python libraries 🚀
It includes :
- Transformations : skull stripping, resampling, registration, histogram matching, bias field correction, normalization and so on
- Preprocessing : BIDS compatible, preprocess all of your patient data with only two lines of code
- Conversion : Dicom to Nifti, Nifti to Dicom
- Sorting : an elegant way to organize your Dicom files
- Anonymization : Dicom files can be anonymized according to your own rules
- Visualization : 2D and 3D light viewer
- Spectroscopy : generation of mask of the MRS voxel/slab
Installation
Requires at least Python 3.7 or above. This library uses a lot of common libraries in image processing as such as Pytorch, Torchio, Numpy, Nibabel, SimpleITK, Matplotlib, Pydicom, Dicom2nifti and so more !
Can be quickly installed with pip :
pip install pydactim
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