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PyFGCZ contains BioBeamer and FCC python code.

Project description

BioBeamer helps to collect huge amounts of instrument data (M|G|TBytes). An example configuration collecting mass spectrometric measurement of more than a dozen devices can be seen through http://fgcz-data.uzh.ch/config/BioBeamer.xml.

FCC is a minimalistic workflow engine. The specification/properties of the program are as follow:

  • converting instrument files, e.g., RAW-files to all kinds of formats
  • being generic
  • follows FGCZ hierarch storage granularity: project, user, instrument, time range
  • multi- platform, host, task
  • configurable through xml file which means new converter by new tag in xml file NO CODE CHANGE!
  • stdout and errout through syslog

A current configugration can be found through http://fgcz-data.uzh.ch/config/fcc_config.xml.

References

FCC - An automated rule-based processing tool for life science data, Simon Barkow-Oesterreicher, Can Türker and Christian Panse, Source Code for Biology and Medicine20138:3 DOI: 10.1186/1751-0473-8-3.

Project details


Release history Release notifications

This version
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0.5.20

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0.5.19

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0.5.18

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0.5.8

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Filename, size & hash SHA256 hash help File type Python version Upload date
PyFGCZ-0.5.20.tar.gz (13.2 kB) Copy SHA256 hash SHA256 Source None Jan 25, 2018

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