Skip to main content
This is a pre-production deployment of Warehouse. Changes made here affect the production instance of PyPI (pypi.python.org).
Help us improve Python packaging - Donate today!

PyFGCZ contains BioBeamer and FCC python code.

Project Description

BioBeamer helps to collect huge amounts of instrument data (M|G|TBytes). An example configuration collecting mass spectrometric measurement of more than a dozen devices can be seen through http://fgcz-data.uzh.ch/config/BioBeamer.xml.

FCC is a minimalistic workflow engine. The specification/properties of the program are as follow:

  • converting instrument files, e.g., RAW-files to all kinds of formats
  • being generic
  • follows FGCZ hierarch storage granularity: project, user, instrument, time range
  • multi- platform, host, task
  • configurable through xml file which means new converter by new tag in xml file NO CODE CHANGE!
  • stdout and errout through syslog

A current configugration can be found through http://fgcz-data.uzh.ch/config/fcc_config.xml.

References

FCC - An automated rule-based processing tool for life science data, Simon Barkow-Oesterreicher, Can Türker and Christian Panse, Source Code for Biology and Medicine20138:3 DOI: 10.1186/1751-0473-8-3.

Release History

Release History

This version
History Node

0.5.18

History Node

0.5.8

Download Files

Download Files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
PyFGCZ-0.5.18.tar.gz (12.4 kB) Copy SHA256 Checksum SHA256 Source Mar 8, 2017

Supported By

WebFaction WebFaction Technical Writing Elastic Elastic Search Pingdom Pingdom Monitoring Dyn Dyn DNS Sentry Sentry Error Logging CloudAMQP CloudAMQP RabbitMQ Heroku Heroku PaaS Kabu Creative Kabu Creative UX & Design Fastly Fastly CDN DigiCert DigiCert EV Certificate Rackspace Rackspace Cloud Servers DreamHost DreamHost Log Hosting