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PyFGCZ contains BioBeamer and FCC python code.

Project description

BioBeamer helps to collect vast amounts of instrument data (M|G|TBytes). An example configuration collecting mass spectrometric measurement of more then a dozen devices can be seen through

FCC is a minimalistic workflow engine. The specification/properties of the program are as follow:

  • converting instrument files, e.g., RAW-files to all kinds of formats
  • being generic
  • follows FGCZ hierarch storage granularity: project, user, instrument, time range
  • multi-platform, host, task
  • configurable through XML file which means new converter by new tag in XML file NO CODE CHANGE!
  • stdout and errout through Syslog

A current configuration can be found through


pip3 install PyFGCZ


adapt the following scripts


:: –ncpu 1 –hostname fgcz-s-021 –output __runme.bash –exec –loop


C:Python37python.exe –ncpu 1 –exec –loop


FCC - An automated rule-based processing tool for life science data, Simon Barkow-Oesterreicher, Can Türker and Christian Panse, Source Code for Biology and Medicine20138:3 DOI: 10.1186/1751-0473-8-3.

Project details

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Files for PyFGCZ, version 3.0.1
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Filename, size PyFGCZ-3.0.1.tar.gz (12.7 kB) File type Source Python version None Upload date Hashes View

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