Segment fluorescent nucleus, and measure the area, and the mean intensity per nucleus.
Project description
PyNucSeg
A python package for segmentation of fluorescent nucleus, and measure the area of nucleus and the mean intensity per nucleus. This package uses stardist (https://github.com/stardist/stardist) for segmentation, and napari (https://github.com/napari/napari) for visualization.
Installation
Run the follwing to install:
pip install pynucseg
Import
from pynucseg import ReferenceImage
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file PyNucSeg-0.0.8.tar.gz.
File metadata
- Download URL: PyNucSeg-0.0.8.tar.gz
- Upload date:
- Size: 6.9 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.10.11
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
6e1eb16570b586db85bb5cd03ec231b82007a197fd22f767ec421f26cc04722f
|
|
| MD5 |
70a20140fdada627edc5f53534895ffc
|
|
| BLAKE2b-256 |
95b9ea6b919168790dbdf29929afc79cb187df13d1a08e03eafe1bcadec61638
|
File details
Details for the file PyNucSeg-0.0.8-py3-none-any.whl.
File metadata
- Download URL: PyNucSeg-0.0.8-py3-none-any.whl
- Upload date:
- Size: 7.1 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.10.11
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
8465032b0c1823cbd74c15c180c6980638b5db8fc56f1612deeceb6583a21c82
|
|
| MD5 |
3cb5f03c5841a1479f341e7b1ec6c7df
|
|
| BLAKE2b-256 |
22a6daf53aee66173f607398454d37337c8a65131ae9637665d40bbfe2b742cd
|
