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Python toolbox for plant tissue simulation prototypes

Project description

# PyPTS: A Python Plant Tissue Simulation tools

PyPTS is a Python package for creating cell-based simulations of plant tissue. It provides the basic building blocks for prototyping and running small to medium scale simulations of two dimensional plant tissues.

## Installation

The standard way of installing PyPTS is either through pip:

pip install PyPTS

or downloading the sources / cloning the repository and running:

python ./setup.py install [–user]

inside the PyPTS source tree.

### Requirements

Currently used versions are indicated. Code possibly works with slightly older versions as well.

  • Python 2.7
  • NumPy (Used all throughout the code)
  • SciPy (Maily for the solvers)
  • h5py (I/O for tissue files)
  • Matplotlib (Plotting tissue structures)
  • PySide (optional; for tissue_plot.py visualization)
  • MPI4Py (optional; for running bulk sweep jobs, cfr: mpi_*.py)

## Usage

See pypts/examples for some example scripts

Project details


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Filename, size & hash SHA256 hash help File type Python version Upload date
PyPTS-0.2.5.tar.gz (63.2 kB) Copy SHA256 hash SHA256 Source None Mar 15, 2016

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