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RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.

Project Description

Read Naming Format is a generic format for assigning read names with encoded information about original positions. RNFtools is an associated software package which can:

  • simulate RNF-compliant reads using a wide class of integrated read simulators (Art, DwgSim, Mason, WgSim, etc.), either from a single genome (i.e., a whole genome sequencing) or multiple genomes (i.e., a metagenomic simulation);
  • evaluate mappers using RNF reads;
  • convert non-RNF simulated reads to RNF (e.g., from SAM format);
  • transform genomic coordinates of RNF reads between different coordinate systems (using chain LiftOver format).
Release History

Release History

This version
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0.3.1.1

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0.3.1.0

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0.3.0.2

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0.3.0.1

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0.3.0

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0.2.7

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0.2.6

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0.2.5

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0.2.4

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0.2.3.dev1

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0.2.2

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0.2.1

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0.2.0

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0.2.0.0b1.dev1

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0.1.0.post51

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0.1.0.post49

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0.1.0.post18

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0.1.0

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RNFtools-0.3.1.1.tar.gz (40.6 kB) Copy SHA256 Checksum SHA256 Source Jun 21, 2017

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