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Ribo-Seq Unit Step Transformation

Project description

This tool is designed for ribo-seq data and produces a metafootprint profile that reveals the influence of mRNA features such as codons/amino acids on the relative read density in the sample across the entire ribosome and nascent peptide region. The Kullback-Leibler divergence across these sites is also provided.

An online version is available on RiboGalaxy.

Author: Patrick O’Connor

Citation

Surveying the relative impact of mRNA features on local ribosome profiling read density in 28 datasets.

Patrick O’Connor, Dmitry Andreev, Pavel Baranov

bioRxiv doi: http://dx.doi.org/10.1101/018762

Project details


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