Ribo-Seq Unit Step Transformation
Project description
This tool is designed for ribo-seq data and produces a metafootprint profile that reveals the influence of mRNA features such as codons/amino acids on the relative read density in the sample across the entire ribosome and nascent peptide region. The Kullback-Leibler divergence across these sites is also provided.
An online version is available on RiboGalaxy.
Author: Patrick O’Connor
Citation
Surveying the relative impact of mRNA features on local ribosome profiling read density in 28 datasets.
Patrick O’Connor, Dmitry Andreev, Pavel Baranov
bioRxiv doi: http://dx.doi.org/10.1101/018762
Release history Release notifications
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
| Filename, size & hash SHA256 hash help | File type | Python version | Upload date |
|---|---|---|---|
| RUST-0.1.1-py2-none-any.whl (30.3 kB) Copy SHA256 hash SHA256 | Wheel | py2 | Oct 20, 2015 |
| RUST-0.1.1.tar.gz (13.9 kB) Copy SHA256 hash SHA256 | Source | None | Oct 20, 2015 |
