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Ribo-Seq Unit Step Transformation

Project Description

This tool is designed for ribo-seq data and produces a metafootprint profile that reveals the influence of mRNA features such as codons/amino acids on the relative read density in the sample across the entire ribosome and nascent peptide region. The Kullback-Leibler divergence across these sites is also provided.

An online version is available on RiboGalaxy.

Author: Patrick O’Connor

Citation

Surveying the relative impact of mRNA features on local ribosome profiling read density in 28 datasets.

Patrick O’Connor, Dmitry Andreev, Pavel Baranov

bioRxiv doi: http://dx.doi.org/10.1101/018762

Release History

Release History

This version
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0.1.1

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0.1.0

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0

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
RUST-0.1.1-py2-none-any.whl (30.3 kB) Copy SHA256 Checksum SHA256 py2 Wheel Oct 20, 2015
RUST-0.1.1.tar.gz (13.9 kB) Copy SHA256 Checksum SHA256 Source Oct 20, 2015

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