A pipeline for ribosome profiling data analysis
Project description
RiboParser
RiboParser is a modular command-line toolkit for comprehensive RNA-seq and Ribo-seq data analysis.
Documentation | Issues | Citation | License
Overview
RiboParser provides an integrated workflow for RNA-seq and ribosome profiling (Ribo-seq) analysis, including reference preparation, raw data preprocessing, alignment, quantification, quality control, RPF density construction, gene-level analysis, codon-level analysis, SeRP analysis, smORF analysis, and downstream visualization with RiboShiny.
The full documentation is available at:
https://renscq.github.io/RiboParser/
Installation
conda install riboparser -c rensc
# or
micromamba install riboparser -c rensc
pip install riboparser
Quick test
riboparser -v
riboparser -c
riboparser -d
riboparser -m
Citation
Ren, S., Li, Y. & Zhou, Z.
RiboParser/RiboShiny: An integrated platform for comprehensive analysis and visualization of ribo-seq data.
Journal of Genetics and Genomics (2025).
DOI: 10.1016/j.jgg.2025.04.010
License
GPL-3.0-or-later.
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