SC2Spa: a deep learning based approach to map transcriptome to spatial origins at cellular resolution
Project description
SC2Spa: a deep learning based approach to map transcriptome to spatial origins at cellular resolution
Install
Install SC2Spa:
conda create -n SC2Spa python=3.9
conda activate SC2Spa
pip install SC2Spa
Analysis for the SC2Spa manuscript
The analysis for the SC2Spa manuscript can be found in this repository. The analysis and related data were also uploaded to Figshare and Zenodo.
Benchmarking and validation code
The benchmarking code, including scripts for cross-validation and cross-dataset validation, is available for download as CV_code.zip from:
https://figshare.com/ndownloader/files/53089715
Many more to come!
We will update more on our Read the Docs page
News
2023/08/22
SC2Spa is now on BioRXiv! https://www.biorxiv.org/content/10.1101/2023.08.22.554277v1
Release history Release notifications | RSS feed
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