A python package for single-cell metabolism analysis.
Project description
SCMeTA
SCMeTA is a python library of single-cell meta-analysis tools. It provides a set of functions for single-cell meta-analysis, including data integration, batch effect correction, cell type annotation, cell clustering, cell trajectory inference, and cell type marker identification. It also provides a set of functions for single-cell data visualization, including dimension reduction, cell clustering, cell trajectory inference, and cell type marker identification.
Installation
SCMeTA is available on PyPI and can be installed with pip:
pip install scmeta
Usage
Data integration
from SCMeTA import SCProcess
sc = SCProcess()
# Load data
sc.load("data/pancreas.RAW")
# Data process
sc.pre_process()
sc.process()
sc.post_process()
Project details
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