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SIRVsuite - a command line tool to QC an RNA-Seq workflow using Lexogen's SIRV spike-in controls

Project description

SIRVsuite

SIRVsuite is a command line tool to QC an RNA-Seq workflow using Lexogen's SIRV spike-in controls. For more specific details about Lexogen's SIRV spike-in controls visit: https://www.lexogen.com/sirvs/sirv-sets/.

SIRVsuite is published under the following licence licence.

General usage

SIRVsuite [-h] -i SAMPLE_SHEET -o OUTPUT_DIR [-a|--all-modules] [--coverage|--ERCC-correlation|--SIRV-concentration] [--experiment-name EXPERIMENT_NAME]

For more information about usage or installation please visit a SIRVsuite github repository: https://github.com/Lexogen-Tools/SIRVsuite.

History

0.1.0 (2020-10-02)

  • First release on PyPI.

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