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downloads SRA short reads from either NCBI or EBI and converts them into fastq.gz files

Project description


Install it via PIP


pip install --upgrade SRAdownload

Usage :: Usage: SRAdownload [OPTIONS] [RUN]...

  A simple tool that downloads SRA short reads by their accessions (RUN)
  from either NCBI or EBI and converts them into fastq.gz files. Version 1.0

  Try it with "SRAdownload SRR2223576 SRR2223582"

  -f, --folder TEXT  Root folder for fetched short reads. Each SRA record will
					 be saved in a sub-folder. DEFAULT: current folder

  -s, --source TEXT  Sources for reads, change to EBI,NCBI if your connection
					 to EBI is faster. DEFAULT: NCBI,EBI

  -h, --help         Show this message and exit.

Project details

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Files for SRAdownload, version 2.2
Filename, size File type Python version Upload date Hashes
Filename, size SRAdownload-2.2.tar.gz (4.0 kB) File type Source Python version None Upload date Hashes View

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