SRAdownload
Install it via PIP
::
pip install --upgrade SRAdownload
Usage :: Usage: SRAdownload [OPTIONS] [RUN]...
A simple tool that downloads SRA short reads by their accessions (RUN)
from either NCBI or EBI and converts them into fastq.gz files. Version 1.0
Try it with "SRAdownload SRR2223576 SRR2223582"
Options:
-f, --folder TEXT Root folder for fetched short reads. Each SRA record will
be saved in a sub-folder. DEFAULT: current folder
-s, --source TEXT Sources for reads, change to EBI,NCBI if your connection
to EBI is faster. DEFAULT: NCBI,EBI
-h, --help Show this message and exit.
1 maintainer
Metadata
1 maintainer
Release files for SRAdownload 2.6
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| SRAdownload-2.6.tar.gz | 16.3 kB | Details |
Release files / SRAdownload-2.6.tar.gz
| Download URL | SRAdownload-2.6.tar.gz |
|---|---|
| Size | 16.3 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
a823837826339e670784b8d6c1389dd4abc3112621ea16925ae1ee1bb93db92f
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BLAKE2b-256 checksum How to use checksums |
beed2dcbd116d4072ac93fa939f6473cd8e5c45c2b0b6b02c597ce9c84da1670
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.7.1 importlib_metadata/4.10.0 pkginfo/1.8.2 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.8.12
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