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downloads SRA short reads from either NCBI or EBI and converts them into fastq.gz files

Project description

SRAdownload

Install it via PIP

::

pip install --upgrade SRAdownload

Usage :: Usage: SRAdownload [OPTIONS] [RUN]...

  A simple tool that downloads SRA short reads by their accessions (RUN)
  from either NCBI or EBI and converts them into fastq.gz files. Version 1.0

  Try it with "SRAdownload SRR2223576 SRR2223582"

Options:
  -f, --folder TEXT  Root folder for fetched short reads. Each SRA record will
					 be saved in a sub-folder. DEFAULT: current folder

  -s, --source TEXT  Sources for reads, change to EBI,NCBI if your connection
					 to EBI is faster. DEFAULT: NCBI,EBI

  -h, --help         Show this message and exit.

Project details


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Files for SRAdownload, version 2.2
Filename, size File type Python version Upload date Hashes
Filename, size SRAdownload-2.2.tar.gz (4.0 kB) File type Source Python version None Upload date Hashes View

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