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Spatial Multimodal Self-supervised Transformer

Project description

SpatialMST

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Spatial Multimodal Self-supervised Transformer

  • Free software: MIT License

Installation

Create environment

conda create -n SpatialMSTEnv python=3.11
conda activate SpatialMSTEnv

Install ipykernel

conda install ipykernel
python -m ipykernel install --user --name SpatialMSTEnv --display-name "Python(SpatialMSTEnv)"

Install POT: Python Optimal Transport

conda install -c conda-forge pot

Install SpatialMST

PyPI package: https://pypi.org/project/spmetatme/

pip install SpatialMST

The source files for spMetaTME can be downloaded from the Github repo.

You can either clone the public repository:

git clone https://github.com/Angione-Lab/SpatialMST.git

Once you have a copy of the source, you can install it with:

cd spmetatme
uv pip install .

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