Spatial Isoform Finder detects spatially variable isoforms in long-read spatial data
Project description
Spatial Isoform Finder (Spl-IsoFind)
Spl-IsoFind can be used to detect spatially variable isoforms in long-read spatial transcriptomics data.
Installation
SplIsoFind requires Python 3.9 or higher. The easiest way to install is through the following command:
pip install SplIsoFind
Tutorials
The tutorial folder contains notebooks to run Spl-IsoFind on demo data. See the documentation for more information. The demo datasets can be downloaded here:
For citation and further information please refer to our preprint
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file splisofind-0.1.4.tar.gz.
File metadata
- Download URL: splisofind-0.1.4.tar.gz
- Upload date:
- Size: 17.7 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.2.0 CPython/3.9.23
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
cf438a0d8a4777844e9842d67359f541d1f995f4d1d30853816ee2daf6245ed9
|
|
| MD5 |
31d9ab23751a7a299f6141164029cdf7
|
|
| BLAKE2b-256 |
6b5a80cb4fedcd2e5a67fcb8b092e2116f789f88d9e01b59ade339a9fe2e55ed
|
File details
Details for the file splisofind-0.1.4-py3-none-any.whl.
File metadata
- Download URL: splisofind-0.1.4-py3-none-any.whl
- Upload date:
- Size: 18.2 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.2.0 CPython/3.9.23
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
8ae377fd5a5c56e1767842a60c2b7000fafb72ce08b821e45a21abc7391ae1f9
|
|
| MD5 |
013e8009c22d0e6fcbb64d5e3e38295d
|
|
| BLAKE2b-256 |
f99a49d047faed38b456d8a178faf3c696e0cca8376154468ade61d321ec91a5
|
