Virtual Microbe Evolutionary Simulator
Project description
README
Virtual Microbes Evolutionary Simulator
Features
- Individual based model of evolving microbes.
- Explicit model of evolving genome.
- Spatially extended environment.
- Microbes evolve metabolic capacities to exploit environmental nutrients.
Dependencies and scripts
- depends on:
- cython
- matplotlib
- networkx (network analysis and drawing)
- ete3 (tree drawing and phylogenetics)
- others see requirements.txt
Install
pip install VirtualMicrobes
Usage
can’t wait to simulate:
vermicelli.py evo <simulation_dir>
open pandora’s box of options:
- vermicelli.py --help
- vermicelli.py evo --help
Documentation
http://virtualmicrobes.readthedocs.io/en/latest/ (in progress..) CHANGELOG ———
nothing changed here
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| Filename, size | File type | Python version | Upload date | Hashes |
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| Filename, size VirtualMicrobes-0.2.5.tar.gz (817.6 kB) | File type Source | Python version None | Upload date | Hashes View |
