Wigman 1.0.0

A package to plot genomic scores

Wigman documentation

Generate heatmap files from BigWig data.

Example

Run the script:

In order to run the plotting script, you need a config "instruction" file. The file should look like the following template:

Bed/Wig/pdf filename    min max step    colormap    title   description

My config.txt contains the following:

bed	hg19/tata_plus.bed	50	50	TATA-Plus
bed	hg19/tata_minus.bed	50	50	TATA-Minus
bw	hg19.100way.phyloP100way.bw	-4	4.02	2	BuRd	PhyloP	Conservation Score
bw	hg19.100way.phastCons.bw	0	1.02	0.5	Reds	PhastCons	Element Conservation
bw	ENCFF000SLA.bigWig	0	50.2	25	Hot	K562	Base Overlap Signal
bw	ENCFF000SPQ.bigWig	0	20.2	10	Hot	HeLa 	Base Overlap Signal
bw	GSM1480321_K562_GROcap_wTAP_plus.bigWig	0	10.2	5	Reds	Plus	Read
bw	GSM1480321_K562_GROcap_wTAP_minus.bigWig	-10	0.5	5	Blues	Minus	Read
pdf	tata_profile.png	size

Then run the following command:

main.py config.txt