ABF Explorer
ABF_Explorer is a simple graphical application for quickly viewing axon binary format (ABF) files from electrophysiology experiments without writing a bunch of boilerplate python/matlab/etc. This graphical tool allows you to quickly scroll through files, read the basic metadata, and take a look at the data.
We use the excellent pyABF package (https://github.com/swharden/pyABF) by Scott W Harden to do the hard work of parsing ABF files.
Use
This is a graphical application for inspecting physiology data in ABF files. ABF Explorer supports Python > 3.7.
Install
pip install abf_explorer
Launch GUI
abf_explorer
Command line options
-d or --startup-dir specify path to a directory containing ABF files.
Use:
abf_explorer -d path/to/abfs
Keyboard shorcuts
TABwill plot the current selectioncwill clear the current plot
Sample data
Sample data (abf's) can be downloaded from this repository.
Changelog
abf_explorer==0.6
Date: 2021-04-21
Reason: Bump PyQt5 version to fix BigSur GUI failure.
1 maintainer
Metadata
1 maintainer
Release files for abf-explorer 0.6
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| File | Size | Uploaded | Provenance | |
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| abf_explorer-0.6.tar.gz | 11.4 kB | Without provenance | Details |
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| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| abf_explorer-0.6-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 36.8 kB
Release files / abf_explorer-0.6.tar.gz
| Download URL | abf_explorer-0.6.tar.gz |
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