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📚 Academic MCP

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🔬 academic-mcp is a Python-based MCP server that enables users to search, download, and read academic papers from various platforms. It provides three main tools:

  • 🔎 paper_search: Search papers across multiple academic databases
  • 📥 paper_download: Download paper PDFs, return paths of downloaded files
  • 📖 paper_read: Extract and read text content from papers

PyPI License Python


📑 Table of Contents


✨ Features

  • 🌐 Multi-Source Support: Search and download papers from 19+ academic databases including arXiv, PubMed, PubMed Central, bioRxiv, medRxiv, Google Scholar, IACR ePrint Archive, Semantic Scholar, CrossRef, Science Direct, Springer, IEEE Xplore, Scopus, CORE, and more.
  • 🎯 Unified Interface: All platforms accessible through consistent paper_search, paper_download, and paper_read tools.
  • 📊 Standardized Output: Papers are returned in a consistent dictionary format via the Paper class.
  • Asynchronous Operations: Efficiently handles concurrent searches and downloads using httpx and async/await.
  • 🔌 MCP Integration: Compatible with MCP clients for LLM context enhancement.
  • 🧩 Extensible Design: Easily add new academic platforms by extending the sources module.

🎬 Screenshot

Screenshot

📝 Supported Academic Platforms

✅ Fully Implemented (19 sources)

Free & Open Access:

  • arXiv - Pre-print repository for physics, mathematics, CS, and more
  • PubMed - Biomedical literature database
  • PubMed Central (PMC) - Free full-text biomedical and life sciences articles
  • bioRxiv - Pre-print server for biology
  • medRxiv - Pre-print server for health sciences
  • Semantic Scholar - AI-powered research tool
  • CrossRef - DOI registration agency and metadata provider
  • Google Scholar - Academic search engine
  • IACR ePrint Archive - Cryptology pre-prints
  • CORE - Open access research papers aggregator

API Key Required:

  • Science Direct - Elsevier's full-text scientific database (requires Elsevier API key)
  • Springer Link - Springer's scientific publications (requires Springer API key)
  • IEEE Xplore - IEEE's digital library (requires IEEE API key)
  • Scopus - Elsevier's abstract and citation database (requires Scopus API key)

Institutional Access Required:

  • ACM Digital Library - ACM's computing literature (no public API)
  • Web of Science - Clarivate's citation database (requires subscription)
  • JSTOR - Digital library of academic journals (no public API)
  • ResearchGate - Academic social network (no official API)

Retired Services:

  • Microsoft Academic - Service retired December 31, 2021 (placeholder implementation)

📦 Installation

academic-mcp can be installed using uv or pip. Below are detailed installation guides for different scenarios.

⚡ Quick Install

Install the package:

pip install academic-mcp

Start the MCP server:

academic-mcp

🔧 MCP Client Configuration

Choose your MCP client and follow the configuration steps:

1️⃣ Claude Desktop

Location:

  • macOS: ~/Library/Application Support/Claude/claude_desktop_config.json
  • Windows: %APPDATA%\Claude\claude_desktop_config.json

Configuration:

{
  "mcpServers": {
    "academic-mcp": {
      "command": "python",
      "args": ["-m", "academic_mcp"],
      "env": {
        "SEMANTIC_SCHOLAR_API_KEY": "",
        "SCIENCEDIRECT_API_KEY": "",
        "SPRINGER_API_KEY": "",
        "IEEE_API_KEY": "",
        "SCOPUS_API_KEY": "",
        "CORE_API_KEY": "",
        "WOS_API_KEY": "",
        "ACADEMIC_MCP_ENABLED_SOURCES": "arxiv,pubmed,pmc,biorxiv,medrxiv,semantic,core,crossref,google_scholar,iacr",
        "ACADEMIC_MCP_DISABLED_SOURCES": "ieee,scopus,springer,sciencedirect,wos,acm,jstor",
        "ACADEMIC_MCP_DOWNLOAD_PATH": "./downloads"
      }
    }
  }
}
2️⃣ Claude Code (CLI)

Location:

  • User-level: ~/.claude/settings.json
  • Project-level: .mcp.json

Configuration:

{
  "mcpServers": {
    "academic-mcp": {
      "command": "academic-mcp",
      "args": [],
      "env": {
        "SEMANTIC_SCHOLAR_API_KEY": "",
        "SCIENCEDIRECT_API_KEY": "",
        "SPRINGER_API_KEY": "",
        "IEEE_API_KEY": "",
        "SCOPUS_API_KEY": "",
        "CORE_API_KEY": "",
        "WOS_API_KEY": "",
        "ACADEMIC_MCP_ENABLED_SOURCES": "arxiv,pubmed,pmc,biorxiv,medrxiv,semantic,core,crossref,google_scholar,iacr",
        "ACADEMIC_MCP_DISABLED_SOURCES": "ieee,scopus,springer,sciencedirect,wos,acm,jstor",
        "ACADEMIC_MCP_DOWNLOAD_PATH": "./downloads"
      }
    }
  }
}

Note: You can also use "command": "python" with "args": ["-m", "academic_mcp"] if you prefer running via Python module.

Verify Installation:

# Check if academic-mcp is loaded
claude mcp list

# Test the server
claude mcp test academic-mcp
3️⃣ Cline (VS Code Extension)

Location: VS Code Settings → Extensions → Cline → MCP Settings

Method 1: Through VS Code Settings UI

  1. Open VS Code Settings (Cmd/Ctrl + ,)
  2. Search for "Cline MCP"
  3. Click "Edit in settings.json"
  4. Add the configuration:
{
  "cline.mcpServers": {
    "academic-mcp": {
      "command": "academic-mcp",
      "args": [],
      "env": {
        "SEMANTIC_SCHOLAR_API_KEY": "",
        "SCIENCEDIRECT_API_KEY": "",
        "SPRINGER_API_KEY": "",
        "IEEE_API_KEY": "",
        "SCOPUS_API_KEY": "",
        "CORE_API_KEY": "",
        "WOS_API_KEY": "",
        "ACADEMIC_MCP_ENABLED_SOURCES": "arxiv,pubmed,pmc,biorxiv,medrxiv,semantic,core,crossref,google_scholar,iacr",
        "ACADEMIC_MCP_DISABLED_SOURCES": "ieee,scopus,springer,sciencedirect,wos,acm,jstor",
        "ACADEMIC_MCP_DOWNLOAD_PATH": "./downloads"
      }
    }
  }
}

Method 2: Direct settings.json Edit

Edit ~/.config/Code/User/settings.json (Linux/macOS) or %APPDATA%\Code\User\settings.json (Windows):

{
  "cline.mcpServers": {
    "academic-mcp": {
      "command": "academic-mcp",
      "args": [],
      "env": {
        "SEMANTIC_SCHOLAR_API_KEY": "",
        "SCIENCEDIRECT_API_KEY": "",
        "SPRINGER_API_KEY": "",
        "IEEE_API_KEY": "",
        "SCOPUS_API_KEY": "",
        "CORE_API_KEY": "",
        "WOS_API_KEY": "",
        "ACADEMIC_MCP_ENABLED_SOURCES": "arxiv,pubmed,pmc,biorxiv,medrxiv,semantic,core,crossref,google_scholar,iacr",
        "ACADEMIC_MCP_DISABLED_SOURCES": "ieee,scopus,springer,sciencedirect,wos,acm,jstor",
        "ACADEMIC_MCP_DOWNLOAD_PATH": "./downloads"
      }
    }
  }
}
4️⃣ Zed Editor

Location: ~/.config/zed/settings.json

Configuration:

{
  "context_servers": {
    "academic-mcp": {
      "command": {
        "path": "academic-mcp",
        "args": []
      },
      "settings": {
        "env": {
          "SEMANTIC_SCHOLAR_API_KEY": "",
          "SCIENCEDIRECT_API_KEY": "",
          "SPRINGER_API_KEY": "",
          "IEEE_API_KEY": "",
          "SCOPUS_API_KEY": "",
          "CORE_API_KEY": "",
          "WOS_API_KEY": "",
          "ACADEMIC_MCP_ENABLED_SOURCES": "arxiv,pubmed,pmc,biorxiv,medrxiv,semantic,core,crossref,google_scholar,iacr",
          "ACADEMIC_MCP_DISABLED_SOURCES": "ieee,scopus,springer,sciencedirect,wos,acm,jstor",
          "ACADEMIC_MCP_DOWNLOAD_PATH": "./downloads"
        }
      }
    }
  }
}
5️⃣ Custom MCP Client

For other MCP clients, use the standard MCP server configuration:

Server Command:

academic-mcp
# or
python -m academic_mcp

Environment Variables:

  • SEMANTIC_SCHOLAR_API_KEY: Optional API key for Semantic Scholar
  • SCIENCEDIRECT_API_KEY: Optional API key for Science Direct
  • SPRINGER_API_KEY: Optional API key for Springer Link
  • IEEE_API_KEY: Optional API key for IEEE Xplore
  • SCOPUS_API_KEY: Optional API key for Scopus
  • CORE_API_KEY: Optional API key for CORE
  • WOS_API_KEY: Optional API key for Web of Science
  • ACADEMIC_MCP_DOWNLOAD_PATH: Download directory (default: ./downloads)
  • ACADEMIC_MCP_ENABLED_SOURCES: Comma-separated list of enabled sources
  • ACADEMIC_MCP_DISABLED_SOURCES: Comma-separated list of disabled sources

Server Capabilities:

  • Tools: paper_search, paper_download, paper_read
  • Transport: stdio
  • Protocol: MCP 1.0

⚙️ Environment Variables

API Keys (optional - only for premium services):

  • SEMANTIC_SCHOLAR_API_KEY: Semantic Scholar (Get API Key)
  • SCIENCEDIRECT_API_KEY: Elsevier Science Direct (Get API Key)
  • SPRINGER_API_KEY: Springer Nature (Get API Key)
  • IEEE_API_KEY: IEEE Xplore (Get API Key)
  • SCOPUS_API_KEY: Elsevier Scopus (Get API Key)
  • CORE_API_KEY: CORE aggregator (Get API Key)
  • WOS_API_KEY: Web of Science (requires institutional subscription)

General Settings:

  • ACADEMIC_MCP_DOWNLOAD_PATH: Directory for downloaded PDFs (default: ./downloads)

Source Control:

  • ACADEMIC_MCP_ENABLED_SOURCES: Comma-separated list to enable specific sources (whitelist)
  • ACADEMIC_MCP_DISABLED_SOURCES: Comma-separated list to disable specific sources (blacklist)
  • If both are set, ACADEMIC_MCP_ENABLED_SOURCES takes precedence
  • If neither is set, all 18 sources are enabled by default

Available Source Names (18 total):

Source Name Type API Key Required Description
arxiv Free - Preprint repository for physics, mathematics, computer science
pubmed Free - Biomedical literature from MEDLINE
pmc Free - PubMed Central full-text archive
biorxiv Free - Preprint server for biology
medrxiv Free - Preprint server for health sciences
google_scholar Free - Google Scholar search
iacr Free - International Association for Cryptologic Research
semantic Free SEMANTIC_SCHOLAR_API_KEY (optional)
Get API Key
Semantic Scholar AI-powered search (higher rate limits with API key)
crossref Free - Crossref DOI metadata
core Free CORE_API_KEY
Get API Key
CORE aggregator of open access papers
ieee Premium IEEE_API_KEY
Get API Key
IEEE Xplore digital library
scopus Premium SCOPUS_API_KEY
Get API Key
Elsevier Scopus database
springer Premium SPRINGER_API_KEY
Get API Key
Springer publications
sciencedirect Premium SCIENCEDIRECT_API_KEY
Get API Key
Elsevier ScienceDirect
wos Premium WOS_API_KEY
Institutional Access
Web of Science (requires institutional subscription)
acm Premium - ACM Digital Library
jstor Premium - JSTOR archive
researchgate Free - ResearchGate social network

🚀 Usage

Once configured, academic-mcp provides three main tools accessible through Claude Desktop or any MCP-compatible client.

1. Search Papers (paper_search)

Search for academic papers across multiple sources:

Basic Search Examples:

# Search arXiv for machine learning papers
paper_search([
    {"searcher": "arxiv", "query": "machine learning", "max_results": 5}
])

# Search PubMed Central for biomedical papers
paper_search([
    {"searcher": "pmc", "query": "cancer treatment", "max_results": 5}
])

# Search CORE for open access papers
paper_search([
    {"searcher": "core", "query": "climate change", "max_results": 5}
])

Multi-Platform Search:

# Search multiple platforms simultaneously
paper_search([
    {"searcher": "arxiv", "query": "deep learning", "max_results": 5},
    {"searcher": "pubmed", "query": "cancer immunotherapy", "max_results": 3},
    {"searcher": "pmc", "query": "diabetes treatment", "max_results": 3},
    {"searcher": "semantic", "query": "climate change", "max_results": 4, "year": "2020-2023"}
])

Premium Sources (require API keys):

# Search IEEE Xplore (requires IEEE_API_KEY)
paper_search([
    {"searcher": "ieee", "query": "neural networks", "max_results": 5}
])

# Search Springer Link (requires SPRINGER_API_KEY)
paper_search([
    {"searcher": "springer", "query": "quantum computing", "max_results": 5}
])

# Search Scopus (requires SCOPUS_API_KEY)
paper_search([
    {"searcher": "scopus", "query": "artificial intelligence", "max_results": 5}
])

Search All Platforms:

# Search all platforms (omit "searcher" parameter)
paper_search([
    {"query": "quantum computing", "max_results": 10}
])

2. Download Papers (paper_download)

Download paper PDFs using their identifiers:

# Download from free sources
paper_download([
    {"searcher": "arxiv", "paper_id": "2106.12345"},
    {"searcher": "pubmed", "paper_id": "32790614"},
    {"searcher": "pmc", "paper_id": "PMC7419405"},
    {"searcher": "biorxiv", "paper_id": "10.1101/2020.01.01.123456"},
    {"searcher": "semantic", "paper_id": "DOI:10.18653/v1/N18-3011"}
])

# Download from CORE (open access)
paper_download([
    {"searcher": "core", "paper_id": "123456789"}
])

Note: Premium sources (IEEE, Springer, Science Direct, Scopus) require institutional access or subscriptions for PDF downloads.

3. Read Papers (paper_read)

Extract and read text content from papers:

# Read papers from free sources
paper_read(searcher="arxiv", paper_id="2106.12345")
paper_read(searcher="pubmed", paper_id="32790614")
paper_read(searcher="pmc", paper_id="PMC7419405")
paper_read(searcher="biorxiv", paper_id="10.1101/2020.01.01.123456")
paper_read(searcher="semantic", paper_id="DOI:10.18653/v1/N18-3011")
paper_read(searcher="core", paper_id="123456789")

🛠️ For Development

For developers who want to modify the code or contribute:

  1. Setup Environment:

    # Install uv if not installed
    curl -LsSf https://astral.sh/uv/install.sh | sh
    
    # Clone repository
    git clone https://github.com/LinXueyuanStdio/academic-mcp.git
    cd academic-mcp
    
    # Create and activate virtual environment
    uv venv
    source .venv/bin/activate  # On Windows: .venv\Scripts\activate
    
  2. Install Dependencies:

    # Install dependencies (recommended)
    uv pip install -e .
    
    # Add development dependencies (optional)
    uv pip install pytest flake8
    

🤝 Contributing

We welcome contributions! Here's how to get started:

  1. Fork the Repository: Click "Fork" on GitHub.

  2. Clone and Set Up:

    git clone https://github.com/yourusername/academic-mcp.git
    cd academic-mcp
    uv pip install -e .  # Install in development mode
    
  3. Make Changes:

    • Add new platforms in academic_mcp/sources/.
    • Update tests in tests/.
  4. Submit a Pull Request: Push changes and create a PR on GitHub.

📄 License

This project is licensed under the MIT License. See the LICENSE file for details.


Happy researching with academic-mcp! If you encounter issues, open a GitHub issue.

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