Tools for ACDC ETL pipeline
Project description
acdc-aws-etl-pipeline
Infrastructure and code for the ACDC ETL pipeline and data operations in AWS
Ingestion
DBT
Release Management
Deploying the dictionary
e.g. to testing
# Example
bash services/dictionary/pull_dict.sh <raw_dictionary_url>
bash services/dictionary/upload_dictionary.py <local_dictionary_path> <s3_target_uri>
# implementation
VERSION=v0.6.0
bash services/dictionary/pull_dict.sh "https://raw.githubusercontent.com/AustralianBioCommons/acdc-schema-json/refs/tags/${VERSION}/dictionary/prod_dict/acdc_schema.json"
python3 services/dictionary/upload_dictionary.py "services/dictionary/schemas/acdc_schema_${VERSION}.json" s3://gen3schema-cad-uat-biocommons.org.au/cad.json
Generating synthetic metadata
- Run this script to generate synthetic metadata for the studies in the dictionary
bash services/synthetic_data/generate_synth_metadata.sh
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file acdc_aws_etl_pipeline-0.2.2.tar.gz.
File metadata
- Download URL: acdc_aws_etl_pipeline-0.2.2.tar.gz
- Upload date:
- Size: 17.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/2.2.1 CPython/3.9.23 Linux/6.11.0-1018-azure
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
75acd47c520b327d6c9e60ef23576b8f859929db7965ea2f8ba60da13be36a6c
|
|
| MD5 |
0aef347b6c661e694aecfc6221a6da50
|
|
| BLAKE2b-256 |
f99926512a05c4e7a215b77873ed6775e51a07cf36a1a1ff0fefb33b7917f86f
|
File details
Details for the file acdc_aws_etl_pipeline-0.2.2-py3-none-any.whl.
File metadata
- Download URL: acdc_aws_etl_pipeline-0.2.2-py3-none-any.whl
- Upload date:
- Size: 20.6 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/2.2.1 CPython/3.9.23 Linux/6.11.0-1018-azure
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
1d244cb8b3d6b11daa00ce44be60123c4285007b11b7a97fa805edd017ee5bc8
|
|
| MD5 |
629a56651bfea79590d64103786273ab
|
|
| BLAKE2b-256 |
20afbb5cd1518441e5a394111f5a8387dab269c76ba39c4d5de23a9b4cad1dc9
|
