Supporting python modules for equilibrium analysis in "Constriction of actin rings by passive crosslinkers"
Python package for the equilibrium analysis of Ref. 1.
It includes a module implementing the equilibrium model, as well as a module for creating plots with this model, as well as plots from finite element calculations output from a related package (elastic-rings) and plots from Monte Carlo simulations from another related package (ActinRingsMC.jl).
Some example scripts for creating plots are provided in the scripts directory.
Installation
This package was developed and used on Linux. It is available on the PyPI respository. It can be installed by running
pip install actinrings
If you are not using a virtual environment, the --user flag may be used instead to install it locally to the user.
To install directly from this repository, run
python -m build
pip install dist/actinrings-[current version]-py3-none-any.whl
To run the above, it may be necessary to update a few packages:
python3 -m pip install --upgrade pip setuptools wheel
For more information on building and installing python packages, see the documentation from the Python Packaging Authority.
References
[1] A. Cumberworth and P. R. ten Wolde, Constriction of actin rings by passive crosslinkers, arXiv:2203.04260 [physics.bio-ph].
Links
1 maintainer
Metadata
1 maintainer
Release files for actinrings 1.1.1
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| actinrings-1.1.1.tar.gz | 12.1 kB | Without provenance | Details for actinrings-1.1.1.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| actinrings-1.1.1-py3-none-any.whl | Python 3 | none | any | Details for actinrings-1.1.1-py3-none-any.whl |
Total release size: 24.3 kB
Release files / actinrings-1.1.1.tar.gz
| Download URL | actinrings-1.1.1.tar.gz |
|---|---|
| Size | 12.1 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/3.8.0 pkginfo/1.8.2 readme-renderer/32.0 requests/2.28.1 requests-toolbelt/0.9.1 urllib3/1.26.12 tqdm/4.62.3 importlib-metadata/5.0.0 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.6 CPython/3.10.9
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Release files / actinrings-1.1.1-py3-none-any.whl
| Download URL | actinrings-1.1.1-py3-none-any.whl |
|---|---|
| Size | 12.2 kB |
| Tags | Python 3 |
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twine/3.8.0 pkginfo/1.8.2 readme-renderer/32.0 requests/2.28.1 requests-toolbelt/0.9.1 urllib3/1.26.12 tqdm/4.62.3 importlib-metadata/5.0.0 keyring/23.5.0 rfc3986/2.0.0 colorama/0.4.6 CPython/3.10.9
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Security for actinrings 1.1.1
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