agentic-proteins 0.2.0

Deterministic, artifact-first protein design runtime and CLI

Agentic Proteins

A deterministic, artifact-first protein design runtime and CLI with enforced invariants, reproducible runs, and strict execution boundaries.

At a glance: deterministic execution • artifact immutability • reproducible runs • invariant enforcement • API + CLI surfaces • structured telemetry
Quality: coverage floors enforced per module, benchmark regression gate active, docs linted and built in CI, no telemetry.

Overview

Agentic Proteins is a deterministic, artifact-first protein design runtime and CLI.
Architecture components are defined in docs/architecture/architecture.md.
Read docs/meta/DOCS_STYLE.md before edits.
Read docs/meta/SPINE.md for order.

Contracts

Deterministic runs occur for identical inputs and seeds.
CLI JSON output schema is stable across releases.
Run artifacts follow a stable layout.

Invariants

Install with pipx install agentic-proteins.
Run with agentic-proteins run --sequence "ACDEFGHIKLMNPQRSTVWY".
Inspect with agentic-proteins inspect-candidate <candidate_id>.

Failure Modes

Docs: docs/index.md.
Docs spine: docs/meta/SPINE.md.
Getting started: docs/overview/getting_started.md.

Extension Points

API doc: docs/api/overview.md.
Core concepts: docs/concepts/core_concepts.md.
Docs style: docs/meta/DOCS_STYLE.md.

Exit Criteria

This README becomes obsolete when a generated entrypoint replaces it.
The replacement is docs/index.md.
Obsolete copies are removed.