agrobiota-sdk 0.1.0a3

An official SDK library for the AGROBIOTA environment

AGROBIOTA SDK

This package contains the code for the Agrobiota Environment.

Usage

The AGROBIOTA SDK simplifies the integration and transformation of AGROBIOTA data. It is available for Python 3.12+ and can be installed using pip:

python3.12 -m pip install agrobiota-sdk

It can be used through a CLI or as a Python library.

CLI

The AGROBIOTA SDK CLI can be used to convert data between formats and perform other tasks. To do this, run the following command:

agb-sdk convert bioindex-to-tabular \ 
    --input-path input.json \ 
    --output-path output.xlsx

Python

The AGROBIOTA SDK can also be used as a Python library. To do this, import the SDK and use the available functions.

from agb_sdk.core.use_cases import convert_bioindex_to_tabular

convert_bioindex_to_tabular(
    input_path="input.json",
    output_path="output.xlsx",
    resolve_taxonomies=True,
)

The library is constantly evolving and new features are being added. If you have any suggestions or feedback, please open an issue or contact us via email at [e-mail].

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This SDK was tested in Linux. It may work in other operating systems, but this is not guaranteed. For windows, we recommend using WSL (Windows Subsystem for Linux).