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A collection of python utilities

Project description

  • Master build status: Master Build Status Live Package Version
  • Development build status: Dev Build Status Dev Coverage Status

A collection of python utilities

Version: 3.1.1

Tools:

  • search_range (A utility for manipulating numerical ranges)
  • status_bar (A simple progress bar indicator)
  • Logger (A class for fast, simple, logging)
  • Several standalone utility methods (See the agutil module page on the wiki)

The bio package:

  • [STRIKEOUT:maf2bed (A command line utility for parsing a .maf file and converting coordinates from 1-based (maf standard) to 0-based (bed standard))]

Deprecated: Will be removed in a future release

The io package:

  • Socket (A low-level network IO class built on top of the standard socket class)
  • SocketServer (A low-level listen server to accept connections and return Socket classes)
  • QueuedSocket (A low-level network IO class built to manage input across multiple channels)

The parallel package:

  • parallelize (A decorator to easily convert a regular function into a parallelized version)
  • parallelize2 (A similar parallelization decorator with a slightly different flavor)
  • IterDispatcher (Logical backend for dispatching calls with parallelize)
  • DemandDispatcher (Logical backend for dispatching calls with parallelize2)
  • ThreadWorker (Task management backend for dispatching parallel calls to threads)
  • ProcessWorker (Task management backend for dispatching parallel calls to processes)

The security package:

  • SecureSocket (A mid-level network IO class built to manage encrypted network communications)
  • SecureConnection (A high-level, multithreaded class for sending and receiving encrypted files and messages)
  • SecureServer (A low-level listen server to accept connections and return SecureConnection instances)
  • encryptFile and decryptFile (Simple methods for encrypting and decrypting local files)
  • agutil-secure (A command line utility for encrypting and decrypting files)

Documentation:

Detailed documentation of these packages can be found on the agutil Github wiki page

Project details


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