This is a pre-production deployment of Warehouse, however changes made here WILL affect the production instance of PyPI.
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Project Description

This package provides software for identifying the genome insertion points random mutants generated by insertional mutagenesis, which have been sequenced as a pool.

The package will install two executables: aimhii and extract_chimeras.

aimhii will run a full analysis starting from sequence data (a FASTQ file), genome sequence, and insert sequence. extract_chimeras just runs the last step of this analysis, assuming you already have a BAM file and a concatenated genome-insert sequence.

For details see the project website https://github.com/granek/aimhii/

Changes in v0.5.5: Added filter_bam.filter_chimeric_reads to pipeline extract only putative junction reads from BWA output. Shifted to hosting on github.

Changes in v0.5.4: Added –plot option to aimhii and shifted a few remaining “prints” to logging

Changes in v0.5.3: Shifted debugging prints to logging and added scripts for generating synthetic sequences

Changes in v0.5.2: Lowered pysam version requirement to allow installation using apt-get in Debian v8.

Changes in v0.5.1: Fixed problem with missing DESCRIPTION.rst.

Release History

Release History

0.5.5

This version

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0.5.4

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0.5.3

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0.5.2

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0.5.1

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0.5.0

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Download Files

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
aimhii-0.5.5-py2-none-any.whl (22.9 kB) Copy SHA256 Checksum SHA256 py2 Wheel May 6, 2016
aimhii-0.5.5.tar.gz (17.9 kB) Copy SHA256 Checksum SHA256 Source May 6, 2016

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