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Project description
ALG_painter
This replaces the original sanger-tol/busco_painter scripts.
A Python package for the plotting and painting of ALG units to busco results resulting in a ALG assignment plot.
Currently, this is rather specific to the Merian Units assigned by Charlotte Wright based on odb10 output.
This package contains 3 subcommands:
- painter - A re-write of the original script (by Charlotte Wright), by Karen van Neikerk, for the paining of ALG's onto busco full table.tsv files. This can optionally call the NCBI API
- plotter - A python re-write of the original R script written by Charlotte Wright.
- plotter_2 - A re-write originally intended for GenomeNote production, so includes specific colour palettes and other logic.
Installation
git clone github.com/sanger-tol/alg_painter.git
cd alg_painter/
uv pip install ./
alg -h
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