alifedata-phyloinformatics-convert
alifedata-phyloinformatics-convert helps apply traditional phyloinformatics software to alife standardized data
Free software: MIT license
Documentation: https://alifedata-phyloinformatics-convert.readthedocs.io.
Built using the dendropy library.
Installation
pip3 install alifedata-phyloinformatics-convertersUse it as a Python module:
import alifedata-phyloinformatics-convert as apc
import dendropy
import pandas as pd
alife_df = pd.read_csv('alifedata.csv')
# get a dendropy Tree from alife-standardized phylogeny dataframe
tree = apc.alife_dataframe_to_dendropy_tree(converted_df)
# get a alife-standardized phylogeny dataframe from a dendropy Tree
reconverted_alife_df = apc.dendropy_tree_to_alife_dataframe(tree)Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
History
0.0.0 (2022-03-22)
First release on PyPI.
1 maintainer
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