alifedata-phyloinformatics-convert 0.1.2

alifedata-phyloinformatics-convert helps apply traditional phyloinformatics software to alife standardized data

alifedata-phyloinformatics-convert

alifedata-phyloinformatics-convert helps apply traditional phyloinformatics software to alife standardized data

• Free software: MIT license

• Documentation: https://alifedata-phyloinformatics-convert.readthedocs.io.

Built using the dendropy library.

Installation

pip3 install alifedata-phyloinformatics-converters

Use it as a Python module:

import alifedata-phyloinformatics-convert as apc
import dendropy
import pandas as pd

alife_df = pd.read_csv('alifedata.csv')

# get a dendropy Tree from alife-standardized phylogeny dataframe
tree = apc.alife_dataframe_to_dendropy_tree(converted_df)

# get a alife-standardized phylogeny dataframe from a dendropy Tree
reconverted_alife_df = apc.dendropy_tree_to_alife_dataframe(tree)

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

History

0.0.0 (2022-03-22)

• First release on PyPI.