ALIGN toolbox!

This package implements most of the functions used in the ALIGN pipeline, a modular image analysis workflow adapted for longitudinal, high-troughput microscopy. Developed by the Towbin Lab of the University of Bern.

This package goes hand in hand with our modular pipelining tool : https://github.com/spsalmon/align_pipeline

Documentation : https://align-toolbox.readthedocs.io/en/latest/index.html

Install the package using pip

Simply run the following command:

pip3 install align_toolbox

Build the package and install it

First, make sure build is installed:
```
pip3 install build
```
Go to the package directory, eg:
```
cd ~/align_toolbox
```
Build the package:
```
python3 -m build
```
Install the package you just built:
```
pip3 install dist/*.whl
```

Release files for align-toolbox 0.5.1

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for align-toolbox 0.5.1
File	Size	Uploaded
align_toolbox-0.5.1.tar.gz	116.5 kB	Sep 22, 2026	Details

Built distribution (wheel)

Table of built distributions (wheels) for align-toolbox 0.5.1
File	Interpreter	ABI	Platform	Reset
align_toolbox-0.5.1-py3-none-any.whl 131.8 kB Sep 22, 2026	Python 3	none	any	Details

Total release size: 248.3 kB

Release files / align_toolbox-0.5.1.tar.gz

Download URL	align_toolbox-0.5.1.tar.gz
Size	116.5 kB
Tags	Source
SHA-256 checksum How to use checksums	`381e3556b311f8fe8db4eaf427414b42b0e5a8607679d802ac79df894706e1e4`
BLAKE2b-256 checksum How to use checksums	`164595175276ce05d86b0ec521227d1c55c186a359dfecaa39e419033cb66151`
Upload date	Sep 22, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	Yes
Uploaded via	`twine/7.0.0 CPython/3.13.14`

Provenance

Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.

Identity

Publishing platform: GitHub Actions
Publishing repository: github.com/spsalmon/align_toolbox
Publishing commit: github.com/spsalmon/align_toolbox/tree/be08850403c096f395a9170628731c293e2f961c

Workflow

Publishing configuration: github.com/spsalmon/align_toolbox/blob/be08850403c096f395a9170628731c293e2f961c/.github/workflows/python-publish.yml
Publishing logs: github.com/spsalmon/align_toolbox/actions/runs/35751533007/attempts/1

Artifact

Subject: align_toolbox-0.5.1.tar.gz
SHA-256 checksum: 381e3556b311f8fe8db4eaf427414b42b0e5a8607679d802ac79df894706e1e4 Verifying attestations

Release files / align_toolbox-0.5.1-py3-none-any.whl

Download URL	align_toolbox-0.5.1-py3-none-any.whl
Size	131.8 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`adc34abff9ae78b041064745ea5f1f1560ffdf9ae97ee410fc88d4d3d6063d32`
BLAKE2b-256 checksum How to use checksums	`f45cb74249401db4b5cdffa4678eb27ad724ee1f666161ecc539a005c78c201a`
Upload date	Sep 22, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	Yes
Uploaded via	`twine/7.0.0 CPython/3.13.14`

Provenance

Identity

Publishing platform: GitHub Actions
Publishing repository: github.com/spsalmon/align_toolbox
Publishing commit: github.com/spsalmon/align_toolbox/tree/be08850403c096f395a9170628731c293e2f961c

Workflow

Publishing configuration: github.com/spsalmon/align_toolbox/blob/be08850403c096f395a9170628731c293e2f961c/.github/workflows/python-publish.yml
Publishing logs: github.com/spsalmon/align_toolbox/actions/runs/35751533007/attempts/1

Artifact

Subject: align_toolbox-0.5.1-py3-none-any.whl
SHA-256 checksum: adc34abff9ae78b041064745ea5f1f1560ffdf9ae97ee410fc88d4d3d6063d32 Verifying attestations