Predicting metal and water binding sites in proteins using 3DCNNs
Project description
AllMetal3D
Predicting metal and water binding sites in proteins using 3DCNNs
Installation
Follow install instructions here
Usage
The easiest way to try the server is on HuggingFace or using the ChimeraX Plugin
You can also run the package locally after installing it. More instructions on here
Citation
If you use AllMetal3D please cite:
AllMetal3D, Simon Duerr, Ursula Roethlisberger, BioRxiv, 2024
If you use Water3D please cite:
Water3D, Simon Duerr, Ursula Roethlisberger, BioRxiv, 2024
License
allmetal3d is licensed under the terms of the MIT license.
Contributing
Interested in contributing? Check out the contributing guidelines. Please note that this project is released with a Code of Conduct. By contributing to this project, you agree to abide by its terms.
Project details
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file allmetal3d-0.5.0.tar.gz.
File metadata
- Download URL: allmetal3d-0.5.0.tar.gz
- Upload date:
- Size: 134.0 kB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.12.8
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
808902e966a4d1a773bef9fbd01ae785a5986b6fc469799c5435278dd84124b6
|
|
| MD5 |
768d0af715e34728585bb949252cfed4
|
|
| BLAKE2b-256 |
67557214c7a9fcb693d8919d626f291d32a8f0671f560dd6de0ef2dfd2e17839
|
Provenance
The following attestation bundles were made for allmetal3d-0.5.0.tar.gz:
Publisher:
publish.yml on lcbc-epfl/allmetal3d
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
allmetal3d-0.5.0.tar.gz -
Subject digest:
808902e966a4d1a773bef9fbd01ae785a5986b6fc469799c5435278dd84124b6 - Sigstore transparency entry: 167171766
- Sigstore integration time:
-
Permalink:
lcbc-epfl/allmetal3d@ad537a462e538dc5973e16abf57a045ff940ad17 -
Branch / Tag:
refs/tags/v.0.5.0-alpha - Owner: https://github.com/lcbc-epfl
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
publish.yml@ad537a462e538dc5973e16abf57a045ff940ad17 -
Trigger Event:
push
-
Statement type:
File details
Details for the file allmetal3d-0.5.0-py3-none-any.whl.
File metadata
- Download URL: allmetal3d-0.5.0-py3-none-any.whl
- Upload date:
- Size: 138.7 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.12.8
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
cc04008db58b504946749428cc4a2dbaaf89c5dbede1819e3b1cd0ab43d9294b
|
|
| MD5 |
b2b13af427acaf5aac3a3ac52afd3bb7
|
|
| BLAKE2b-256 |
bf92369249c6635949bc4d9050139444f3e9095e58c5f0aefd7e3fd24aa34b1e
|
Provenance
The following attestation bundles were made for allmetal3d-0.5.0-py3-none-any.whl:
Publisher:
publish.yml on lcbc-epfl/allmetal3d
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
allmetal3d-0.5.0-py3-none-any.whl -
Subject digest:
cc04008db58b504946749428cc4a2dbaaf89c5dbede1819e3b1cd0ab43d9294b - Sigstore transparency entry: 167171768
- Sigstore integration time:
-
Permalink:
lcbc-epfl/allmetal3d@ad537a462e538dc5973e16abf57a045ff940ad17 -
Branch / Tag:
refs/tags/v.0.5.0-alpha - Owner: https://github.com/lcbc-epfl
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
publish.yml@ad537a462e538dc5973e16abf57a045ff940ad17 -
Trigger Event:
push
-
Statement type: