AlphaPeel

AlphaPeel is a software package for calling, phasing, and imputing genotype and sequence data in pedigree populations. This program implements single-locus peeling, multi-locus peeling, and hybrid peeling. A complete description of these methods is given in the suggested citation:

Whalen, A, Ros-Freixedes, R, Wilson, DL, Gorjanc, G, Hickey, JM. (2018). Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees. Genetics Selection Evolution; doi: https://doi.org/10.1186/s12711-018-0438-2

User guide

See https://alphapeel.readthedocs.io/en/latest

Quick links:

Conditions of use

AlphaPeel is fully and freely available for all use under the MIT License.

Requirements

Python 3
NumPy
Numba

Installation

See https://alphapeel.readthedocs.io/en/latest/get_started.html#install-software

Metadata

Release files for AlphaPeel 1.4.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for AlphaPeel 1.4.0
File	Size	Uploaded
alphapeel-1.4.0.tar.gz	68.9 kB	Aug 7, 2026	Details

Built distribution (wheel)

Table of built distributions (wheels) for AlphaPeel 1.4.0
File	Interpreter	ABI	Platform	Reset
alphapeel-1.4.0-py3-none-any.whl 77.5 kB Aug 7, 2026	Python 3	none	any	Details

Total release size: 146.4 kB

Release files / alphapeel-1.4.0.tar.gz

Download URL	alphapeel-1.4.0.tar.gz
Size	68.9 kB
Tags	Source
SHA-256 checksum How to use checksums	`d4cde7c479c1eaa42ab09c355c6bdbc9e79fcee753098db02350bd1f06c62d59`
BLAKE2b-256 checksum How to use checksums	`a4e2138ef7502c23b865cb3a110b47624de02d052e05138efb0d5f3a4a9c322c`
Upload date	Aug 7, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	Yes
Uploaded via	`twine/7.0.0 CPython/3.13.14`

Provenance

Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.

Identity

Publishing platform: GitHub Actions
Publishing repository: github.com/AlphaGenes/AlphaPeel
Publishing commit: github.com/AlphaGenes/AlphaPeel/tree/d6bb908a51a8ad22dbd779bc8a22d8809e0808e1

Workflow

Publishing configuration: github.com/AlphaGenes/AlphaPeel/blob/d6bb908a51a8ad22dbd779bc8a22d8809e0808e1/.github/workflows/publish.yml
Publishing logs: github.com/AlphaGenes/AlphaPeel/actions/runs/31186389283/attempts/1

Artifact

Subject: alphapeel-1.4.0.tar.gz
SHA-256 checksum: d4cde7c479c1eaa42ab09c355c6bdbc9e79fcee753098db02350bd1f06c62d59 Verifying attestations

Release files / alphapeel-1.4.0-py3-none-any.whl

Download URL	alphapeel-1.4.0-py3-none-any.whl
Size	77.5 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`84e6d3a56622bbf1ed96acaeff08a8ced0c88faef2fda15175d35b7c45e96699`
BLAKE2b-256 checksum How to use checksums	`d1a1e4b4d3ea5efa63064dce38df2bb9fb95327b17b44e43312536eb4b6da082`
Upload date	Aug 7, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	Yes
Uploaded via	`twine/7.0.0 CPython/3.13.14`

Provenance

Identity

Publishing platform: GitHub Actions
Publishing repository: github.com/AlphaGenes/AlphaPeel
Publishing commit: github.com/AlphaGenes/AlphaPeel/tree/d6bb908a51a8ad22dbd779bc8a22d8809e0808e1

Workflow

Publishing configuration: github.com/AlphaGenes/AlphaPeel/blob/d6bb908a51a8ad22dbd779bc8a22d8809e0808e1/.github/workflows/publish.yml
Publishing logs: github.com/AlphaGenes/AlphaPeel/actions/runs/31186389283/attempts/1

Artifact

Subject: alphapeel-1.4.0-py3-none-any.whl
SHA-256 checksum: 84e6d3a56622bbf1ed96acaeff08a8ced0c88faef2fda15175d35b7c45e96699 Verifying attestations