alvoc 0.1.0

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Alvoc

Abundance learning for variants of concern

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Documentation

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Overview

Alvoc is used for estimating the abundace of variants of concern from wastewater sequencing data.

It can be used for:

• Converting nucleotide and amino acid mutations for a particular virus
• Determining the frequency of mutations of interest in BAM files
• Plotting the depth for each ARTIC amplicon
• Comparing amplicon GC content with its read depth (as a measure of degredation)

Installation

With Pip

Pip is the default package installer for Python.

1. Install Python. We recommend using pyenv for python version management.

2. Install it directly from source (main branch).

$ pip install git+https://github.com/alvoc/alvoc.git@main
---> 100%
Done!

Usage/Examples

[TBD]

License

This project is licensed under the terms of the MIT license.