amadeusgpt 0.0.2

AmadeusGPT🎻: We turn natural language descriptions of behaviors into machine-executable code

🪄 We turn natural language descriptions of behaviors into machine-executable code.

• We use large language models (LLMs) to bridge natural language and behavior analysis.
• This work is accepted to NeuRIPS2023! Read the paper, AmadeusGPT: a natural language interface for interactive animal behavioral analysis
• Like this project? Please consider giving us a star ⭐️!

Install & Run AmadeusGPT🎻

• AmadeusGPT is a Python package hosted on pypi. You can create a virtual env (conda, etc, see below*) or Docker and run:

pip install 'amadeusgpt[streamlit]'

• Please note that you need an openAI API key, which you can easily create here.
• If you want the Streamlit Demo on your computer, you will also need demo files that are supplied in our repo (see below**), so please git clone the repo and navigate into the AmadeusGPT directory. Then in your conda env/terminal run pip install '.[streamlit]'. Then, to launch the Demo App execute in the terminal:

make app

Citation

If you use ideas or code from this project in your work, please cite us using the following BibTeX entry. 🙏

@article{ye2023amadeusGPT,
     title={AmadeusGPT: a natural language interface for interactive animal behavioral analysis}, 
     author={Shaokai Ye and Jessy Lauer and Mu Zhou and Alexander Mathis and Mackenzie Weygandt Mathis},
     journal={Thirty-seventh Conference on Neural Information Processing Systems},
     year={2023},
     url={https://openreview.net/forum?id=9AcG3Tsyoq},

• arXiv preprint version AmadeusGPT: a natural language interface for interactive animal behavioral analysis by Shaokai Ye, Jessy Lauer, Mu Zhou, Alexander Mathis & Mackenzie W. Mathis.

Install tips

• *Make a new conda env: conda create --name amadeusGPT python=3.9 then run conda activate amadeusGPT or you can also use our supplied conda if you git cloned the repo (navigate into the conda directory): conda env create -f amadesuGPT.yml then pip install amadeusGPT once created/launched.
• **Git clone this repo: so please open a terminal, we recommend to download into Documents (so type cd Documents) and run git clone https://github.com/AdaptiveMotorControlLab/AmadeusGPT.git Then go into the dir (cd AmadeusGPT)
• If you want to use SAM, you need to download the weights. Otherwise you will see the following message in the app: Cannot find SAM checkpoints. Skipping SAM. Download them and add to "static" directory: wget https://dl.fbaipublicfiles.com/segment_anything/sam_vit_b_01ec64.pth

Install trouble shooting:

• If you hit an error during installing on an M1/M2 Macbook with installing HDF5, run conda install h5py in your conda env.
• If you launch the app and get an ffmpeg error, RuntimeError: No ffmpeg exe could be found. Install ffmpeg on your system, or set the IMAGEIO_FFMPEG_EXE environment variable. try running conda install ffmpeg.
• If you have an M1/M2 chip and use CEBRA within AmadeusGPT, and you get this error: RuntimeError: Device type MPS is not supported for torch.Generator() api run pip install --upgrade torch.

License

AmadeusGPT is license under the Apache-2.0 license.

• 🚨 Please note several key dependencies have their own licensing. Please carefully check the license information for DeepLabCut (LGPL-3.0 license), SAM (Apache-2.0 license), CEBRA (Non-Commercial), etc...

News

• 🤩 Dec 2023, code released!
• 🔥 Our work was accepted to NeuRIPS2023
• 🧙‍♀️ Open-source code coming in the fall of 2023
• 🔮 arXiv paper and demo released July 2023
• 🪄Contact us