amici-st 0.1.0

Cross-attention-based cell-cell interaction inference from ST data.

AMICI: Attention Mechanism Interpretation of Cell-cell Interactions

Cross-attention-based cell-cell interaction inference from ST data.

Installation

You need to have Python 3.10 or newer installed on your system. If you don't have Python installed, we recommend installing Mambaforge.

Install the latest development version via the following command:

pip install git+https://github.com/azizilab/amici.git@main

We plan on releasing AMICI on PyPI in the near future.

Documentation

Documentation and tutorials are coming soon!

Citation

t.b.a

Disclaimer

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.

Justin Hong, Khushi Desai, and Elham Azizi are inventors on a provisional patent application having U.S. Serial No. 63/884,704, filed on September 19, 2025, by The Trustees of Columbia University in the City of New York directed to the subject matter of the manuscript associated with this repository.