Ammolite - From Biotite to PyMOL and back again
This package enables the transfer of structure related objects from Biotite to PyMOL for visualization, via PyMOL’s Python API:
Import AtomArray and AtomArrayStack objects into PyMOL - without intermediate structure files.
Convert PyMOL objects into AtomArray and AtomArrayStack instances.
Use Biotite’s boolean masks for atom selection in PyMOL.
Display images rendered with PyMOL in Jupyter notebooks.
Have a look at this example:
PyMOL is a trademark of Schrodinger, LLC.
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