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Ammolite - From Biotite to PyMOL and back again

This package enables the transfer of structure related objects from Biotite to PyMOL for visualization, via PyMOL’s Python API:

  • Import AtomArray and AtomArrayStack objects into PyMOL - without intermediate structure files.

  • Convert PyMOL objects into AtomArray and AtomArrayStack instances.

  • Use Biotite’s boolean masks for atom selection in PyMOL.

  • Display images rendered with PyMOL in Jupyter notebooks.

Have a look at this example:


ammolite demo

PyMOL is a trademark of Schrodinger, LLC.

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Release files for ammolite 0.8.0

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Source distribution for ammolite 0.8.0
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ammolite-0.8.0.tar.gz 15.7 kB Details

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Table of built distributions (wheels) for ammolite 0.8.0
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ammolite-0.8.0-py3-none-any.whl Python 3 none any Details

Total release size: 33.2 kB

Release files / ammolite-0.8.0.tar.gz

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Release files / ammolite-0.8.0-py3-none-any.whl

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0.8.0 This release

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0.7.0

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0.6.0

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0.5.0

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0.4.1

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0.4.0

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0.3.0

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0.2.0

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0.1.1

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