AMPcombi : A parsing, filtering and annotation workflow for tools predicting AntiMicrobial Peptide genes
AMPcombi and its submodules provide a command-line interface to:
- parse the results of multiple antimicrobial peptide (AMP) prediction tools into a single table
- align the AMP hits against a reference AMP database for functional and structural classifications
- filter the AMP hits according to their physio-chemical properties
- cluster the filtered AMP hits into AMP families
- predict signaling peptides if present along the prepropeptide sequence
📕 The full usage documentation for AMPcombi can be accessed here.
📎 If you plan to use AMPcombi please don't forget to cite us 💚
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Release files for AMPcombi 3.0.0
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| File | Size | Uploaded | Provenance | |
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| ampcombi-3.0.0.tar.gz | 30.5 kB | Without provenance | Details |
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|---|---|---|---|---|
| ampcombi-3.0.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 97.1 kB
Release files / ampcombi-3.0.0.tar.gz
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Release files / ampcombi-3.0.0-py3-none-any.whl
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| Size | 66.5 kB |
| Tags | Python 3 |
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