analysis-kit

One installable package carrying the house figure style and the agent chassis for every analysis project in the lab, so the look, the audit trail and the way an agent asks "what can I run here?" are written once instead of four times.

Consumers: PyFLASH (immunofluorescence), CircadianWorkbench (activity recordings), and the microglia protocols.

What is here now

Two rules the package is built around

The kit never imports a project. Everything it needs arrives on the Registry a project hands it. If a module here ever names a project, the abstraction has failed.

No scientific dependency at import time. Every project depends on this one, so import analysis_kit must stay as cheap as importing json. tests/ enforces it.

Install

pip install analysis-kit

The import package uses an underscore:

import analysis_kit

print(analysis_kit.__version__)

For development:

git clone https://github.com/Jay2owe/analysis-kit.git
cd analysis-kit
pip install -e ".[test]"
python -m pytest

Support status

analysis-kit is the shared infrastructure for Brancaccio Lab analysis projects. Its public API is pre-1.0 and may change between minor releases.

License

Released under the MIT License; the license text is included in every source and wheel distribution.