anngtf 0.0.0

anngtf - lift annotations from a `.gtf` file to your AnnData object.

anngtf

Lift annotations from a gtf to your adata object.

Installation

To install via pip:

pip install anngtf

To install the development version:

git clone https://github.com/mvinyard/anngtf.git

cd anngtf; pip install -e .

Example usage

import anndata
import anngtf

gtf = "/path/to/ref/hg38/refdata-cellranger-arc-GRCh38-2020-A-2.0.0/genes/genes.gtf"

adata = anndata.read_h5ad("/path/to/singlecell/data/adata.h5ad")
ag.lift_genes(adata, gtf)