annocli
A command-line tool to query and download genome annotations from the Annotrieve API.
Installation
pip install annocli
From source:
git clone https://github.com/apollo994/annocli.git
cd annocli
pip install .
./test.sh
For development (includes pytest):
pip install -e ".[dev]"
Commands
annocli {COMMAND} --help
download: Download annotations for given taxonomy IDsalias: Match sequence IDs between annotation and assembly filessummary: Get information about features and biotypes availablestats: Get summary statistics about gene and transcript features
For detailed usage examples, see USAGE.md.
Testing
Unit and component tests (mocked, no network):
pytest
End-to-end tests against the live Annotrieve API:
pytest -m e2e
1 maintainer
Metadata
1 maintainer
Release files for annocli 1.0.3
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| File | Size | Uploaded | Provenance | |
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| annocli-1.0.3.tar.gz | 17.2 kB | With provenance | Details |
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|---|---|---|---|---|
| annocli-1.0.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 36.8 kB
Release files / annocli-1.0.3.tar.gz
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| Tags | Python 3 |
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