annotate read from mapping data, and assign the multiple mapped reads, and count
Project description
AnnoRead
Annoread is a utility to annotation the read fot the gene it belong to.
Requirements
- biobrary
installation
pip install annoread
Usage
annoread:
Annotated the reads based on mapping data, GTF file and transcriptomic FASTA file.
assignread
Assign reads which mapped to multiple features.
countmtx
Count the read number of features in different levels.
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