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Python bindings for libAntimony

Project description

libAntimony

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Summary

Antimony is a human-readable, human-writable modular model definition language, letting you create SBML models with a simple text interface, i.e.

   S1 -> S2; k1*S1;
   S2 -> S3; k2*S2;
   S1 = 10
   k1 = 0.3
   k2 = 0.1

For a working online example, see MakeSBML

Antimony is free to use in any application: a simple API is provided to allow Antimony strings to be converted to and from SBML, so the application's users can interact with their models in an easy-to-comprehend format. C/C++ applications can use the library directly, and Python applications can use the Python bindings.

Documentation can be found:

Since Antimony is used within Tellurium, the general Tellurium documentation may also be of interest.

Python bindings are available via pypi, and can be installed with pip:

pip install antimony

Other binaries are available from https://github.com/sys-bio/antimony/releases

Antimony depends on the libSBML and SBMLNetwork libraries. The currently-used versions of each will always be available from https://github.com/sys-bio/libroadrunner-deps/.

Antimony has been supported by NIH/NIGMS Grants GM081070, GM123032, and NIBIB EB028887.

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