ANVAGE
ANnotation Variants GEnome is a toolkit software to perform routine operations that involve VCF, GFF3 and FASTA genome files.
usage
anvage select --vcf tests/data/sample.vcf \
--genome tests/data/genome.fasta \
--annotation tests/data/genome.gff3 \
--selectionAnnotationType CDS \
--output_prefix res
anvage synonymous --vcf tests/data/sample.vcf \
--genome tests/data/genome.fasta \
--annotation tests/data/genome.gff3 \
--output_prefix res
anvage flank --vcf tests/data/sample.vcf \
--genome tests/data/genome.fasta \
--windowsSize 25 \
--output_prefix res
https://github.com/laurabenestan/BLAST/blob/master/flanking_sequence.py
1 maintainer
Metadata
1 maintainer
Release files for anvage 0.1.1
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
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| anvage-0.1.1.tar.gz | 6.3 kB | Without provenance | Details for anvage-0.1.1.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
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| anvage-0.1.1-py3-none-any.whl | Python 3 | none | any | Details for anvage-0.1.1-py3-none-any.whl |
Total release size: 14.7 kB
Release files / anvage-0.1.1.tar.gz
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