A package for the analysis of population genetics for genomic regions (APGGR) targeting bacterial species.
Project description
Analysis of Population Genetics for Genomic Region (APGGR)
A package with a set of modules for the analysis of population genetics of genomic regions targeting bacterial species
Installation
pip install apggr
Usage
Usage: apggr [--version|--version-only] [--help]
Commands
cds
cluster
variant
Arguments
--input-file
-d
--out
--out-file
--csv
Examples
BASH
apggr cds -f '/path/to/annotation/file' –csv 'path/to/csv'
Python
from apggr.cds import get_cds_features
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