articlemap 1.1.0

An open standard for evidence-bound, tamper-evident article records — reference toolkit (canonicalization, conformance ladder, reviewer-event log, offline verifier, Atlas Capsule).

ArticleMap

An open standard for evidence-bound, tamper-evident article records. Make reported numbers and claims in supported study records clickable, replayable, and tamper-evident.

For HTA agencies · systematic-review groups · guideline developers · journals · pharma medical affairs.

An ArticleMap record is JSON for a single study — RCT, observational, or meta-analysis — with deterministic hashing, schema-validated structure, and evidence anchors that bind every effect estimate and claim to a verbatim quote and an executable selector into the source. One reviewer click jumps from an extracted hazard ratio to the exact lines of Table 2 in the source PDF. Sign it, anchor it, and an auditor five years later replays the entire chain offline with one command.

EXTRACTED EFFECT   HR 0.69   95% CI 0.57–0.83
        ↓
EVIDENCE ANCHOR    EV-002 · quote ≤ 25 words · selector
        ↓
SOURCE LOCATOR     page 4 · lines 14–16 · Table 2

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What's in this repository

This is the reference implementation of the ArticleMap trust layer — the deterministic, offline-verifiable core that makes the standard real. Open the format; sell the quality and the verification. The schema is open (CC0); this tooling is Apache-2.0. Adopt without us.

Module	What it is
articlemap/canonical.py	RFC 8785 JSON Canonicalization (JCS) + SHA-256 — the hashing foundation.
articlemap/signing.py	Ed25519, did:key identities, offline key resolution.
articlemap/record.py	The ArticleMap record: content-hashing, content-addressed identity, signing.
articlemap/conformance.py	The L0–L3 conformance ladder.
articlemap/eventlog.py	The reviewer-event log: append-only, hash-chained, per-event signed.
articlemap/capsule.py	The Atlas Capsule: a self-contained, offline-verifiable bundle.
articlemap/verifier.py	The offline verifier — record + log + cross-binding.
articlemap/extract/	Stages 1–3: PDF → source → layout → index (PyMuPDF).
articlemap/slots.py · retrieval.py · extractor.py · anchor.py	Stages 4–7: slot plan → retrieval → extraction → anchors.
articlemap/build.py	The orchestrator: index → signed, L3, verifiable record.
articlemap/claimguard.py	Fail-closed ClaimGuard v2 import boundary: reconciles raw artifacts, replays evidence, and emits an unsigned ArticleMap draft + receipt.

Everything in the trust layer is deterministic and offline — no network, no clock dependence, no API keys. That is the whole point: the verifier is what an auditor or a journal's editorial-integrity team runs. For pinned inputs, reproducibility is enforced in CI across supported Python versions. The extraction stages run offline too with a deterministic backend, and swap in a Claude backend (articlemap[llm]) for higher recall — the anti-hallucination invariant holds either way (docs/EXTRACTOR.md).

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Quickstart

pip install -e ".[dev]"          # cryptography + jsonschema + pytest
# (PDF extraction also needs:  pip install -e ".[extract]")

# Verify the worked orthopaedics-RCT example: record + reviewer-event log + source
python -m articlemap.cli verify examples/ortho_rct/record.json \
    --log examples/ortho_rct/events.jsonl \
    --source examples/ortho_rct/source.txt

# Verify the self-contained Atlas Capsule offline (no other files needed)
python -m articlemap.cli capsule-verify examples/ortho_rct/capsule.json

# Or run the whole product: index → signed, L3, verifiable record + capsule
python -m articlemap.cli build index.json --layout layout.json \
    --source source.json --out record.json --sign

VERIFIER: PASS   conformance: L3
  [pass] record.schema
  [pass] record.content_hash
  [pass] record.article_id
  [pass] record.signatures
  [pass] record.conformance
  [pass] log.envelope_shape      … log.sequencing … log.chaining
  [pass] log.hash_recompute      … log.signatures … log.lifecycle
  [pass] log.record_continuity   … log.anchored_root … log.record_binding
  [pass] capsule.pinned_content_hash … pinned_event_log_root … merkle_root

Tamper with one digit of one effect estimate and the verifier names the failing check, the event index, and the field — there is nothing to argue about.

In code

from articlemap import ArticleMapRecord, evaluate, verify

rec = ArticleMapRecord.load("examples/ortho_rct/record.json")
print(rec.article_id)                       # amap:sha256:68aeb382...
print(evaluate(rec).achieved)               # L3

report = verify(rec, events=None)
print(report.ok, report.conformance.achieved)

ClaimGuard → ArticleMap

ClaimGuard artifacts enter the trust layer through an explicit fail-closed boundary. A successful import is an unsigned L3 draft ready for review, not a reviewer decision or signature.

pip install -e ".[schema]"
python examples/claimguard_corr_demo/run_demo.py

The synthetic fixture first attempts HR 0.42 against a source quote reporting HR 0.69 and must reject it. It then imports the corrected HR 0.69 and reproduces the committed record and receipt byte-for-byte. See docs/CLAIMGUARD_INTEGRATION.md and the technical brief.

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The conformance ladder

Adopt at your own pace. Each rung is independently, mechanically checkable.

L0 Minimal	Identity, provenance, ≥ 1 claim.	Replaces a spreadsheet row.
L1 Evidence-bound	Every claim and every effect references ≥ 1 evidence anchor with a verbatim quote (≤ 25 words) and a selector.	Where ArticleMap separates from every other extraction tool.
L2 Replayable	Integrity block populated; inference-ruleset version recorded; invalidation rules declared.
L3 Source-bound	source_hash matches the exact source bytes; record round-trips deterministically.	Instant, byte-level audit.

Below L1 it's a spreadsheet with extra steps. See docs/CONFORMANCE.md.

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How it works

PDF in.  ──►  Extract  ──►  Review  ──►  Sign & Anchor  ──►  Replayable record out.

1. Extract. Layout-aware parsing → IMRaD index → typed slot retrieval → extractor in JSON mode → anchor proposer. Anti-hallucination invariant: no field becomes an anchor unless its quote appears verbatim in the source (Index.find_quote). All of Stages 1–7 are implemented — a deterministic regex backend by default, an optional Claude backend for recall. See docs/EXTRACTOR.md.
2. Review. Source on the left, structured extraction on the right. Every accept/edit/reject is recorded in the reviewer-event log with a timestamp, a DID, a diff, and a signature. (docs/reviewer_event_log_spec.md)
3. Sign & Anchor. JCS canonical hash · Ed25519 signature · evidence Merkle root · Atlas Capsule export. An auditor with the verifier and the pinned roots replays the whole chain. (docs/VERIFIER.md)

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CLI

articlemap verify        record.json [--log events.jsonl] [--source src] [--json]
articlemap conformance   record.json [--source src] [--json]
articlemap log-verify    events.jsonl [--record record.json]
articlemap capsule-build record.json events.jsonl --out capsule.json
articlemap capsule-verify capsule.json
articlemap translog-build  record.json... --out log.json   # RFC 6962 log
articlemap translog-verify log.json record.json            # prove inclusion
articlemap export        record.json... --format csv|jsonl|fhir   # rows or FHIR Evidence
articlemap diff          old.json new.json                 # double-extraction / corrections
articlemap hash          record.json
articlemap extract       paper.pdf --out artifacts/      # needs pymupdf
articlemap build         index.json --layout layout.json --source source.json --out record.json [--sign]

Exit status is 0 on pass, 1 on failure — drops straight into CI.

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Tests

pytest          # 304 deterministic, offline tests (5 optional skips in CI)

Coverage includes the RFC 8785 number vectors, did:key round-trips, every conformance rung and its failure modes, all eight reviewer-event-log checks, capsule tamper detection, the extraction pipeline (including the anti-hallucination guard dropping fabricated quotes), the ClaimGuard admission boundary and numeric-mismatch regressions, an end-to-end test that index → signed L3 capsule verifies green, and a golden test on the committed example.

Regenerate the worked example after any change to the trust layer:

python scripts/build_example.py

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Documents

• docs/architecture.md — the full pipeline and stage status.
• docs/EXTRACTOR.md — the extraction pipeline (Stages 4–7) and backends.
• docs/CLAIMGUARD_INTEGRATION.md — the fail-closed ClaimGuard import boundary.
• docs/pitch/CLAIMGUARD_ARTICLEMAP_TECHNICAL_BRIEF.md — evaluator brief, evidence, boundaries, and pilot plan.
• docs/releases/1.1.0.md — toolkit 1.1.0 release notes.
• docs/CONFORMANCE.md — the L0–L3 ladder.
• docs/VERIFIER.md — what the offline verifier checks, and the two-hash design.
• docs/SCHEMA.md — the record format.
• docs/reviewer_event_log_spec.md — the event-log specification.
• docs/ROADMAP.md — the long road from here to a field standard.
• dist/articlemap_verify.py — a self-contained single-file auditor verifier (one file + cryptography).
• docs/pitch/ — the pitch deck and a worked CORR pilot proposal.

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License

Schema: CC0. Tooling: Apache-2.0 (see LICENSE).