Skip to main content

Framework for handling spectroscopic data.

Project description

https://zenodo.org/badge/DOI/10.5281/zenodo.4717937.svg

ASpecD is a framework for handling spectroscopic data focussing on reproducibility. In short: Each and every processing step applied to your data will be recorded and can be traced back, and additionally, for each representation of your data (e.g., figures, tables) you can easily follow how the data shown have been processed and where they originate from.

What is even better: Actual data processing and analysis no longer requires programming skills, but is as simple as writing a text file summarising all the steps you want to have been performed on your dataset(s) in an organised way. Curious? Here is an example:

format:
  type: ASpecD recipe
  version: '0.2'

datasets:
  - /path/to/first/dataset
  - /path/to/second/dataset

tasks:
  - kind: processing
    type: BaselineCorrection
    properties:
      parameters:
        kind: polynomial
        order: 0
  - kind: singleplot
    type: SinglePlotter1D
    properties:
      filename:
        - first-dataset.pdf
        - second-dataset.pdf

For more general information on the ASpecD framework see its homepage, and for how to use it, its documentation.

Features

A list of features:

  • Framework for writing applications handling spectroscopic data

  • Consistent handling of numeric data and corresponding metadata

  • History of each processing step, automatically generated, aiming at full reproducibility

  • Undo and redo of processing steps

  • Import and export of data

  • Generic plotting capabilities, easily extendable

  • Report generation using pre-defined templates

  • Recipe-driven data analysis, allowing tasks to be performed fully unattended in the background and without programming skills

And to make it even more convenient for users and future-proof:

Target audience

The ASpecD framework addresses every scientist working with data (both, measured and calculated) on a daily base and concerned with reproducibility. The ASpecD framework ensures reproducibility and—as much as possible—replicability of data processing, starting from recording data and ending with their final (graphical) representation, e.g., in a peer-reviewed publication. This is achieved by automatically creating a gap-less record of each operation performed on your data. If you do care about reproducibility and are looking for a system that helps you to achieve this goal, ASpecD may well be interesting for you.

How to cite

ASpecD is free software. However, if you use ASpecD for your own research, please cite both, the article describing it and the software itself:

  • Jara Popp, Till Biskup. ASpecD: A Modular Framework for the Analysis of Spectroscopic Data Focussing on Reproducibility and Good Scientific Practice. Chemistry–Methods 2:e202100097, 2022. doi:10.1002/cmtd.202100097

  • Till Biskup. ASpecD (2022). doi:10.5281/zenodo.4717937

To make things easier, ASpecD has a DOI provided by Zenodo, and you may click on the badge below to directly access the record associated with it. Note that this DOI refers to the package as such and always forwards to the most current version.

https://zenodo.org/badge/DOI/10.5281/zenodo.4717937.svg

License

This program is free software: you can redistribute it and/or modify it under the terms of the BSD License.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

aspecd-0.7.1.tar.gz (951.3 kB view hashes)

Uploaded source

Built Distribution

aspecd-0.7.1-py3-none-any.whl (197.9 kB view hashes)

Uploaded py3

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page