atgcN_count
1 Introduction
atgcN_count is a tool to stat the counts and percentage of each base in fasta file.
2 Installation
pip install atgcN_count
There will be a command atgcN_count created under the same directory as your pip command.
3 Usage
usage: atgcN_count[-h] [-i <file>] [-v] [-d <int>] [-N]
To stat the counts of each base in a fasta file.
optional arguments:
-h, --help show this help message and exit
-i <file> input fasta file
-v also output statistics for each sequence [False]
-d <int> decimals for output result [2]
-N do not take non-ATGC bases into account when caculate percentage
[False]
Author
Guanliang MENG
Citation
Currently I have no plan to publish atgcN_count.
1 maintainer
Release files for atgcN-count 0.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| atgcN_count-0.0.1.tar.gz | 15.6 kB | Details |
Release files / atgcN_count-0.0.1.tar.gz
| Download URL | atgcN_count-0.0.1.tar.gz |
|---|---|
| Size | 15.6 kB |
| Tags | Source |
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