atlasapprox-disease 0.1.2

Disease cell atlas approximations, python API

atlasapprox-disease

atlasapprox-disease is a Python package for accessing approximated versions of cellxgene's disease cell atlas data. This package enables efficient query of large-scale single-cell datasets with reduced memory and computational requirements.

Installation

You can install the package from PyPI:

pip install atlasapprox-disease

Please note: You must have Python >=3.10 to use the high-level API.

Quick start

Example 1: To query differential cell type abundance of the flu disease

# import and create an API object
from atlasapprox_disease import API
api = API()

# make API call
df_cell_type_abundance = api.diff_celltype_abundance(disease_keyword="flu")

# display the result
print(df_cell_type_aundance)

Output:

For more detailed tutorials and examples, please visit the API tutorials site (API tutorials site ).

Example 2: To query the top 5 differentially expressed genes of the flu disease

df_gene_exp = api.api.diff_gene_expression(disease_keyword="flu", cell_type_keyword="blood", top_n=5)

print(df_gene_exp)

Output:

For more detailed tutorials and examples, please visit the API tutorials site.